Almond flour bagels offer a delightful, wholesome twist on a beloved classic. Crafted with just a handful of simple ingredients, these bagels are a game-changer for anyone seeking a healthier, gluten-free, and protein-packed breakfast option. Their satisfyingly dense texture and rich flavor make them the perfect way to energize your day, providing sustained fullness and a delicious start to any morning.

Recipe Overview
Why You’ll Love These Almond Flour Bagels
There’s something truly magical about homemade bagels, and this almond flour version takes that experience to a whole new level. What makes these bagels stand out? It’s their incredible simplicity and fantastic nutritional profile. Unlike traditional bagels that rely heavily on refined flour, these use finely ground almond flour, making them naturally gluten-free and a much lower-carb alternative. This recipe was born from a common question after sharing my popular 2-ingredient Greek yogurt bagels, which typically call for all-purpose or self-rising flour: “Can I use almond flour instead?” While the ratio isn’t a direct 1:1 swap like with traditional flours, a 2:1 almond flour to yogurt ratio creates a wonderfully soft and satisfying dough.
The resulting texture is distinctly soft and dense, offering a hearty bite that’s different from wheat-based bagels but equally, if not more, enjoyable for those who prioritize healthy eating or have gluten sensitivities. These delicious bagels prove that you don’t have to sacrifice flavor or satisfaction when choosing a gluten-free lifestyle. They are perfect on their own, or sliced and topped with your favorite spreads. If you enjoy unique and healthy bagel recipes, you might also love my savory Jalapeno Cheddar Bagels or my incredibly popular Cottage Cheese Bagels for more protein-packed breakfast ideas.
Essential Tips for Perfect Almond Flour Bagels
Achieving the perfect batch of almond flour bagels is incredibly easy, but a few key pointers can elevate your baking experience and ensure fantastic results every time. Follow these expert tips to create bakery-quality bagels right in your own kitchen:
- **Choose the Right Flour:** Always use fine, blanched almond flour, not almond meal. Almond meal is coarser and contains almond skins, which will result in a grainy texture. Fine almond flour provides the best consistency for a smooth, bagel-like dough.
- **Understand Serving Sizes:** This recipe yields 4 large, generously sized bagels. However, you can easily divide the dough into 6 to 8 smaller bagels if you prefer. Keep in mind that the nutritional information provided is for 4 bagels, with each serving containing a remarkable 19 grams of protein. Adjust your portion sizes accordingly.
- **The Importance of Cooling:** Patience is a virtue, especially when baking with almond flour. I cannot stress this enough: allow your bagels to cool completely before attempting to slice or serve them. Almond flour goods need time to firm up and fully set after baking. Slicing them too soon can cause them to crumble or lose their shape, compromising their delightful texture.
- **Yogurt Choice Matters (for protein!):** While dairy-free or plain regular yogurt can be used, I highly recommend opting for Greek yogurt. Greek yogurt not only contributes to the unique texture of these bagels but also significantly boosts their protein content, making them an even more satisfying and nutritious meal.
- **Don’t Overwork the Dough:** Unlike traditional wheat flour doughs that benefit from extensive kneading, almond flour dough is more delicate. Mix until just combined and a cohesive dough forms. Overmixing can lead to a tougher texture.
- **Achieve a Golden Crust:** For that classic bagel appearance and extra flavor, don’t skip the egg wash! It helps achieve a beautiful golden-brown crust and acts as a binder for any toppings.
Frequently Asked Questions About Almond Flour Bagels
Whether you’re new to baking with almond flour or simply curious about these protein-packed bagels, here are answers to some common questions that arise when making this recipe:
Yes, you absolutely can! If you’re opting for all-purpose flour, maintain a 1:1 ratio with the Greek yogurt. For example, use 1 cup of all-purpose flour for every 1 cup of Greek yogurt. If you are using self-rising flour, remember to omit the baking powder and salt from the recipe, as these are already included in self-rising flour. The texture will be slightly different, but still delicious!
Your homemade almond flour bagels will stay fresh in the refrigerator for 4-5 days. To ensure they retain their quality, store them in a paper bag or an airtight container. For longer storage, these bagels freeze exceptionally well. You can freeze them for up to 2 months. When freezing, place them in a freezer-safe bag or container to prevent freezer burn.
For optimal results, reheating these bagels in a toaster oven for about a minute or in a preheated conventional oven for a few minutes will bring them back to life with a slightly crispy exterior and warm interior. You can also use a microwave for a quick reheat, though they might be a bit softer. My personal preference is to slice the bagel in half and pop it into the toaster oven for that perfect toasted experience.
Absolutely! The air fryer is a fantastic tool for making these bagels. Preheat your air fryer to 375°F (190°C). Line the air fryer basket with parchment paper to prevent sticking. Carefully place the formed bagels into the basket, ensuring they are not overcrowded, and air fry for approximately 22-24 minutes, or until they are beautifully golden brown and cooked through. It’s crucial to allow the bagels to cool for at least 10 minutes after air frying before handling them, as they will be quite soft and fragile immediately after cooking.
Essential Ingredients for Your Almond Flour Bagels
Making these delicious and healthy almond flour bagels requires just a few pantry staples. The magic lies in the combination of these ingredients, resulting in a perfectly textured and flavorful bagel. Here’s a breakdown of what you’ll need to gather before you begin:

- Almond Flour: This is the star of our gluten-free bagels! For the best results, use fine, blanched almond flour. This type of almond flour has a smooth consistency, which is crucial for achieving a bagel-like texture. I often find a great value at Costco for high-quality almond flour.
- Baking Powder: This leavening agent is essential for giving the bagels a light lift and ensuring they don’t turn out too dense.
- Salt: A pinch of salt enhances all the flavors in the bagel dough, balancing the sweetness of the yogurt and bringing out the savory notes.
- Onion Powder or Garlic Powder: These aromatic spices add a subtle, savory depth to your bagels. You can choose either one based on your preference, or even a blend of both for a richer flavor profile.
- Greek Yogurt: The other main ingredient, Greek yogurt, provides moisture, tang, and a significant protein boost. Its thick consistency is key to forming a pliable dough. I personally love brands like Stonyfield and Straus Family Creamery for their quality and taste.
- Egg, beaten: A small, beaten egg is used to create a golden, glossy egg wash for the bagels before baking. This not only gives them a beautiful appearance but also helps the toppings adhere.
- Optional Topping: For that classic bagel shop finish, “everything bagel seasoning” is highly recommended. Alternatively, you can use poppy seeds, sesame seeds, or a combination of both for a delightful crunch and visual appeal.
Step-by-Step Guide: How to Make Almond Flour Bagels
Crafting these high-protein, gluten-free almond flour bagels is an incredibly straightforward process, even for beginner bakers. Follow these easy steps to create your own batch of delightful homemade bagels:
Begin by preheating your oven to 350°F (175°C). While the oven heats, line a baking sheet with parchment paper, ensuring a non-stick surface for your bagels.

Step 1: In a medium-sized mixing bowl, combine the dry ingredients: almond flour, baking powder, salt, and your chosen onion or garlic powder.

Step 2: Use a spatula or a whisk to thoroughly toss and mix these dry ingredients together. Ensure they are well combined before moving on to the wet ingredients.

Step 3: Now, add the Greek yogurt directly into the bowl with the dry ingredients. This will be the main liquid component of your dough.

Step 4: Continue mixing with your spatula until all ingredients are fully incorporated and a cohesive dough begins to form. Unlike traditional flour doughs, almond flour dough requires minimal mixing or kneading; simply combine until no dry streaks remain.

Step 5: Transfer the dough from the bowl to a lightly floured cutting board or a clean, flat surface. Form the dough into a single ball, then gently divide it into 4 equal sections. If you prefer smaller bagels, you can divide it into 6 or 8 sections.

Step 6: Take each section of dough and roll it into a ball. Then, using your finger, gently poke a hole through the center of each ball to create the classic bagel shape. Work with care, as the almond flour dough is softer and more delicate than wheat-based dough.

Step 7: Carefully transfer the shaped bagels to the prepared baking sheet. Using a pastry brush, lightly coat the top of each bagel with the beaten egg wash. Immediately sprinkle your chosen topping, such as everything bagel seasoning, poppy seeds, or sesame seeds, over the egg-washed surface.

Step 8: Place the baking sheet into the preheated oven and bake for 20-22 minutes, or until the bagels are beautifully golden brown. Baking times can vary slightly by oven, so keep an eye on them. Ensure they cook for at least 20 minutes to be fully cooked through.
Final step: Once baked, remove the bagels from the oven and transfer them to a wire rack. It is absolutely crucial to allow them to cool completely before attempting to slice or serve. This cooling period allows the bagels to set properly and firm up, ensuring they maintain their shape and delightful texture when cut. Enjoy your fresh, homemade almond flour bagels!

Creative Substitutions and Delicious Variations
One of the best things about this almond flour bagel recipe is its versatility. You can easily adapt it to suit your dietary needs or flavor preferences. Don’t be afraid to experiment with these simple substitutions and exciting variations:
- Flour Alternatives: While almond flour is used here for a gluten-free and lower-carb option, you can certainly experiment with other flours. All-purpose flour is a common substitute; however, remember to adjust the ratio (typically 1:1 with yogurt). For self-rising flour, omit the baking powder and salt from the recipe.
- Yogurt Choices: Greek yogurt is recommended for its high protein content and thick consistency, which contributes to the bagel’s structure. If you’re dairy-free, feel free to use your favorite plain, unsweetened dairy-free yogurt (such as almond milk or coconut milk yogurt), ensuring it has a thick, creamy texture similar to Greek yogurt. Plain regular yogurt can also be used, though it might yield a slightly softer dough.
- Savory Seasonings: I used onion powder for a subtle savory note, but garlic powder works equally well and can be used as a direct substitute. For a more robust flavor, you can even combine both! Beyond these, consider adding a pinch of dried herbs like oregano or Italian seasoning to the dough for an herbaceous twist.
- Topping Ideas: The “everything bagel seasoning” is a classic for a reason, offering a delightful mix of flavors and textures. However, the possibilities are endless!
- Simple Seeds: Poppy seeds, sesame seeds, or a blend of both provide a traditional bagel topping.
- Cheese: Sprinkle shredded cheddar, mozzarella, or a Parmesan blend on top before baking for a cheesy bagel.
- Herbs: Fresh rosemary or dried dill can add an aromatic touch.
- Sweet Options: For a sweeter bagel, omit the savory powders in the dough and top with a sprinkle of cinnamon sugar or a drizzle of maple syrup after baking.
- Add-ins for the Dough: Consider folding in ingredients directly into the dough for extra flavor and texture. Think finely chopped sun-dried tomatoes, a small amount of shredded cheese, or even some finely minced chives for a savory delight.
Almond Flour Bagels
Video
Ingredients
- 2 cups almond flour
- 2 teaspoons baking powder
- 1/2 teaspoon salt
- 1/2 teaspoon onion powder, or garlic powder
- 1 cup Greek Yogurt
- 1 small egg, beaten
Optional Topping:
- Everything bagel seasoning
Instructions
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Preheat the oven to 350°F and prepare a sheet pan with parchment paper.
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In a bowl, add the 2 cups almond flour, 2 teaspoons baking powder, 1/2 teaspoon salt, and 1/2 teaspoon onion powder.

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Use a spatula to toss to combine.

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Next, add in the 1 cup Greek Yogurt.

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Mix again to incorporate fully until dough is formed. It will not need a lot of mixing.

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Transfer the dough to a cutting board or flat surface. Form a ball and divide it into 4 sections.

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Make 4 balls and, using your finger, gently poke a hole in each one to form a bagel shape. Work carefully because the dough is soft and fragile.

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Transfer the bagels to the sheet pan and top each one with some egg wash (from the 1 small egg beaten) and Everything bagel seasoning.

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Bake for 20-22 minutes, or until golden brown. Ovens vary, but they will need at least 20 minutes to fully cook on the inside.

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Remove from the oven and allow it to cool fully before slicing. You must allow them to cool, or the bagels won’t hold their shape. Serve and enjoy.

Notes
- The serving size for the provided nutrition information is one bagel.
- While this recipe specifically uses almond flour for a gluten-free option, you can substitute with all-purpose flour. If doing so, I recommend using approximately 1 and 1/4 cups of all-purpose flour for a similar dough consistency, adjusting slightly as needed.
- The onion powder adds a lovely savory depth. If you’re not a fan, you can either omit it entirely or swap it for garlic powder.
- Feel free to skip the Everything Bagel seasoning topping if you prefer your bagels plain or wish to use another topping.
- Always allow the bagels to cool completely on a wire rack before attempting to slice them. This is crucial for maintaining their shape and texture, as they continue to set as they cool.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
Additional Info
You May Also Enjoy These Recipes
If you loved these almond flour bagels, you’re in for a treat! Explore more delicious and healthy recipes from my kitchen that perfectly complement a fitness-focused lifestyle or simply offer wholesome, flavorful meal ideas:
- Matthew McConaughey Tuna Salad: A light, protein-packed salad inspired by a classic.
- Olive Salad: A vibrant and flavorful salad perfect as a side or a topping.
- Black Bean Sweet Potato Tacos: A hearty, plant-based meal bursting with flavor.
- Dubai Pistachio Chocolate Bars: Indulgent yet balanced, these bars are a delightful sweet treat.
- Chipotle Chicken Avocado Melt: A warm, comforting sandwich with a spicy kick.

Thank you for visiting! I truly hope you enjoy making and savoring these delightful almond flour bagels. If you try this recipe, please take a moment to leave me some feedback in the comment section below and don’t forget to give it a rating! Your comments and ratings are incredibly helpful and appreciated.
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